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However, expert-annotated training data for BEL are costly, especially for low-resource languages. Moreover, many cross-lingual BEL systems rely on SapBERT-based retrievers trained on predominantly English aliases in the KB, leading to poor generalization to unseen non-English mentions and limited context-aware disambiguation. We propose BioELX, a two-stage cross-lingual BEL framework that requires no task-specific annotated training corpora. In Stage~1, we enrich SapBERT training with Wikidata-derived multilingual aliases and use the resulting retriever to improve cross-lingual candidate retrieval. In Stage~2, we perform context-aware disambiguation with a pre-trained LLM ranker that jointly considers the mention context and candidate, eliminating th","title":"BioELX: Cross-lingual Biomedical Entity Linking via Alias-based Retrieval and LLM Ranking","url":"https://arxiv.org/abs/2605.27380","vendor":"arxiv_cs_ai"},"summary":"arXiv:2605.27380v1 Announce Type: cross \nAbstract: Cross-lingual biomedical entity linking (BEL) maps mentions in any language to unique identifiers in a biomedical knowledge base (KB), supporting clinical and biomedical NLP applications. However, expert-annotated training data for BEL are costly, especially for low-resource languages. Moreover, many cross-lingual BEL systems rely on SapBERT-based retrievers trained on predominantly English aliases in the KB, leading to poor generalization to unseen non-English mentions and limited context-aware disambiguation. We propose BioELX, a two-stage cross-lingual BEL framework that requires no task-specific annotated training corpora. In Stage~1, we enrich SapBERT training with Wikidata-derived multilingual aliases and use the resulting retriever to improve cross-lingual candidate retrieval. In Stage~2, we perform context-aware disambiguation with a pre-trained LLM ranker that jointly considers the mention context and candidate, eliminating th","title":"BioELX: Cross-lingual Biomedical Entity Linking via Alias-based Retrieval and LLM Ranking","vendor":"arxiv_cs_ai"},"confidence":{"method":"deterministic"},"decision":"POSITIVE","issued_at":"2026-05-28T04:43:38Z","notes":"Spider vendor_press (news) news.vendor_press.v1","object":{"captured_by":"crovia.spider.vendor_press","primary_source_url":"https://arxiv.org/abs/2605.27380"},"predecessors":[],"schema":"crovia.axiom.v1","signature":"ed25519:fbbd814440407c58c6b1f5bdb5589e07fb5a62bcc894a64ca8d6f48c67a42febcced14fe05b3902b0a83647904ac99247856922ad8a5189b310489528ae83302","signer":"crovia.substrate","subject":{"observed_at":"2026-05-28T04:43:38Z","source_collector":"spider:vendor_press","target_id":"https://arxiv.org/abs/2605.27380"},"tsa":{"authority":"crovia.substrate.bootstrap","rfc3161_token":"{\"kind\":\"crovia.bootstrap.tsa\",\"source_jsonl\":\"/opt/crovia/spider/data/news/vendor_press_v1.jsonl\",\"source_seal_merkle_root\":\"spider_vendor_press_v1\",\"upgrade_path\":\"Sessione H \\u2014 OpenTimestamps weekly anchor\"}"},"zk_mode":"clear","zk_proof":null},"ledger":{"leaf_hash":"95667669392ebb46c75993e90fbdd7ec47d3b4452f457e114074011ae6ca0c2a","leaf_index":155730,"ledger_path":"/opt/crovia/substrate/axiom_ledger.jsonl"},"merkle_proof":{"hash_alg":"sha256","leaf_prefix":"0x00","node_prefix":"0x01","odd_leaf_rule":"duplicate_last","path":[{"sibling":"0fdfa3911466b6de72978ffcd088949d7088500fc6636ac88f1ba4c4b274d011","side":"right"},{"sibling":"cd7856abb28b717bc6e4cdac977354f3269b00d88b75e1c28f612bb3cf3bbdcf","side":"left"},{"sibling":"ecd907c1a3d1e02792b9762bc85dedbe1a2954e90141d79573987c27da45a7ee","side":"right"},{"sibling":"6bd4b5df343ebecc12301a591e5d1fa405f28060566fc195b5f59a4ea31117cb","side":"right"},{"sibling":"0be8e4e45969ab9c7878d76180b9fe0a87e67dc9408fc8841fa2b6a5a05c5f95","side":"left"},{"sibling":"2705a86d317f9a971707b5f3fccf535f83cfd3ea5ebd04e4aa38f3e34e5db0c9","side":"right"},{"sibling":"a299ae15a94dac7bcde3130343976ae9f62e27db41f358bdc5756bffdece756d","side":"left"},{"sibling":"afa86de7d2b39f53748bea8c4274ea857aed4694d034da9da1628457bb87cbe4","side":"right"},{"sibling":"0adb35dd3ad9bfc4a781c02606acf0a3ce1e28e1a88066209cc1a35814e790ad","side":"right"},{"sibling":"f292d3278e493ec60902181b8c0bd5c89c0a1168ef928222fe6161287982f7f0","side":"right"},{"sibling":"2209295faf1a5bf51c97c6fd5a839a8181a4ea44f490420381530f35df7d9b2f","side":"right"},{"sibling":"5784576a15214ea9fc3569e6e1cff1ef443c0b1fc0d036028489088af089de27","side":"right"},{"sibling":"311772ec218efcb2da5a337f9e9f042fe1cc0028643adb0a354787e4ea7911b7","side":"right"},{"sibling":"66331bac84ca0f8983eb09fac7eaf95af234f1b82680b793eabff4ee25caac40","side":"left"},{"sibling":"35ca36cee447f0ef7064a25d55f59357c66901e31427729c4c1d8b14aa8adb6c","side":"left"},{"sibling":"7b6f0bea4291a5e63574dfca9aa0f9756f450c9478c3d07474d39a7ababb51f9","side":"right"},{"sibling":"1d39fe14b21e2ebbfb87e882423b24ee9469eae1e4c77af5b799ac4db9537467","side":"right"},{"sibling":"d841ad93efda0869e5eb97678f348f03f5caab4353e05ff4bf18f47fb945b822","side":"left"}]},"schema":"crovia.axiom_proof.v1","seal":{"first_collector_run_id":"","first_receipt_hash":"","jsonl_path":"/opt/crovia/substrate/axiom_ledger.jsonl","key_id":"430895f101d38164","last_collector_run_id":"","last_receipt_hash":"","leaf_count":156177,"merkle_root":"c5705a0243d16afd8b1ebfd731b7aa304079c442c2a7906493c5bbed374c69ec","public_key_hex":"cf742e26f75669dc673cb5c0786a1ae23ae8ca19c347317192ce40c28a7ff25c","run_id":"hourly_json_retrofit_20260528T053701Z","schema":"crovia.seal.v1","seal_family_version":"crovia-seal-family/1","seal_kind":"substrate_batch","sealed_at":"2026-05-28T05:37:36Z","sig_algorithm":"ed25519","signature":"f087e13febc8bb6a2e0812610de64cebc65be92915518d9c4b230799c3b161839b04c4eb1b02741f938f35545a76ab76555b04c782bdc2f9a44852d171d65909","signer_version":"1.1.0"},"trust_root":{"key_id":"430895f101d38164","public_key_hex":"cf742e26f75669dc673cb5c0786a1ae23ae8ca19c347317192ce40c28a7ff25c","signature_algorithm":"ed25519","url":"/registry/canon/TRUST_ROOT.md"},"verifier":{"spec":"/registry/canon/AXIOM_RECEIPT_v1.md","url":"/v/axm_2becc64f1fa9e45410ea81d8dbe44ebece33aa7d6f7672974f16a581330e46b3"}}