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Yet automating their configuration remains a structural challenge, as scores are available only at the system level, whereas the parameters governing agent behavior are local. We argue that optimizing these systems is fundamentally a credit-assignment problem. We therefore introduce CANTANTE, a framework that decomposes system-level rewards into per-agent update signals by contrasting rollouts of multiple joint configurations on the same query. We instantiate it for prompt optimization, treating agent prompts as learnable system parameters. We evaluate CANTANTE against GEPA and MIPROv2 on programming (MBPP), mathematical reasoning (GSM8K), and multi-hop question answering (HotpotQA). 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