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While neural synthesis methods typically aim to approximate the resulting spectral characteristics, we propose directly modeling the underlying pulse shapes and temporal structure. We present the Pulse-Train-Resonator (PTR) model, a differentiable synthesis architecture that generates engine audio as parameterized pulse trains aligned to engine firing patterns and propagates them through recursive Karplus-Strong resonators simulating exhaust acoustics. The architecture integrates physics-informed inductive biases including harmonic decay, thermodynamic pitch modulation, valve-dynamics envelopes, exhaust system resonances and derived engine operating modes such as throttle operation and Deceleration Fuel Cutoff (DFCO). 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