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This paper studies small transformer-based language models trained from scratch on multi-step deductive tasks, focusing on the distinction between horizontal reasoning, where intermediate steps are generated autoregressively, and vertical reasoning, where inference unfolds implicitly across layers before the first output token is produced. We analyze two synthetic tasks: logical consequence over chains of symbolic implications and root-to-leaf navigation in binary trees. Mechanistic interpretability reveals that Chain-of-Thought supervision enables models to learn rule-based inference rather than statistical shortcuts. 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