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Existing methods either select samples independently within each domain or rely on computationally expensive proxy models to learn continuous domain weights. We propose PartitionSel, a cross-domain minibatch selection approach that maximizes a validation-guided gradient-matching utility under per-domain budgets encoded as a partition-matroid constraint. By coupling the per-domain budgets through a single utility, PartitionSel is designed to reduce redundancy in selections across domains. The proposed objective is weakly submodular and admits an orthogonal matching pursuit algorithm with provable approximation guarantees. Empirically, we evaluate PartitionSel for minibatch selection during the fine-tuning of Qwen2.5 and Llama-3 on MetaMathQA and Mol-Instructions. 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The proposed objective is weakly submodular and admits an orthogonal matching pursuit algorithm with provable approximation guarantees. Empirically, we evaluate PartitionSel for minibatch selection during the fine-tuning of Qwen2.5 and Llama-3 on MetaMathQA and Mol-Instructions. 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